Kinetic models from experiment
HMM of the folding process of Diels-Alderase
- M.N. Trung, S. Kieninger, Z. Fandi, D. Qiu, G. Liu, A. Saiardi, H. Jessen, B. Keller, D. Fiedler "Stable isotopomers of myo-inositol to uncover the complex MINPP1-dependent inositol phosphate network" ACS Cent. Sci. (2022) 8, 1683-694. https://doi.org/10.1021/acscentsci.2c01032
- C. Manz, A. Y. Kobitski, A. Samanta, B. G. Keller, A. Jäschke, G. U. Nienhaus, “Single-molecule FRET reveals the energy landscape of the full-length SAM-I riboswitch,” Nat. Chem. Biol., 441, 1172 (2017).
https://doi.org/10.1038/nchembio.2476
- B. G. Keller, A. Kobitski, A. Jäschke, G. U. Nienhaus, F. Noé, “Complex RNA Folding Kinetics Revealed by Single-Molecule FRET and Hidden Markov Models,” J. Am. Chem. Soc., 136, 4534–4543 (2014). https://doi.org/10.1021/ja4098719
- B. G. Keller, J.-H. Prinz, F. Noé, “Markov models and dynamical fingerprints: Unraveling the complexity of molecular kinetics,” Chem. Phys., 396, 92–107 (2012). https://doi.org/10.1016/j.chemphys.2011.08.021