Density-based clustering
Density-based clustering
Image Credit: J.-O. Joswig, B. G. Keller∗ "CommonNNClustering - A Python package for generic common-nearest-neighbour clustering" J. Chem. Inf. Model. (2023), 63, 1093-1098.
Review article
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J.-O. Joswig, B. G. Keller∗ "Clustering – Basic concepts and methods" (2022) arXiv https://arxiv.org/abs/2212.01248
Common nearest neighbor clustering
- J.-O. Joswig, B. G. Keller "CommonNNClustering - A Python package for generic common-nearest-neighbour clustering" J. Chem. Inf. Model. (2023), 63, 1093-1098. https://doi.org/10.1021/acs.jcim.2c01493
- O. Lemke B. Keller, “Common Nearest Neighbor Clustering—A Benchmark,” Algorithms, 11, 19–21 (2018) https://doi.org/10.3390/a11020019
- O. Lemke B. G. Keller, “Density-based cluster algorithms for the identification of core sets,” J. Chem. Phys. 145, 164104 (2016) https://doi.org/10.1063/1.4965440
- B. Keller, X. Daura, W. F. van Gunsteren, “Comparing geometric and kinetic cluster algorithms for molecular simulation data,” J. Chem. Phys., 132, 074110 (2010) https://doi.org/10.1063/1.4965440
Software
Common Nearest Neighbor Clustering (CommonNNClustering) is part of the python package scikit-learn-extra