Under conditions of environmental stress native proteins can undergo misfolding and aggregation. A well-known example of highly ordered misfolded protein aggregates is amyloid fibrils. These nearly insoluble and fibrillar composites are defined as self-assembled supermolecules with a characteristic cross-β structure. Moreover, extracellular amyloid plaques are pathological signatures of neurodegenerative disorders like Alzheimer's disease (AD), Huntington’s disease (HD), Parkinson's disease (PD) and type II diabetes (T2D). The formation of amyloid fibrils is considered as a multi-step reaction characterized by a variety of transient oligomers and polymorphic fibril structures. Investigation of individual reaction steps and aggregate species is significant for understanding the nucleation of amyloid fibrils and the driving forces involved in their formation, as well as to develop techniques to regulate their kinetics.
Our work focuses on the highly amyloidogenic fragment NFGAIL derived from the human islet amyloid polypeptide (hlAPP). To gain insights into the early oligomer properties we studied NFGAIL by using ion-mobility mass spectrometry (IM-MS) coupled with infrared multi-photon dissociation spectroscopy (IRMPD), as well as solution techniques. We found that at neutral pH NFGAIL follows a nucleation-dependent mechanism to form amyloid fibrils. During the lag phase, highly polydisperse, polymorphic and compact oligomers, as well as extended intermediates, are present. We gathered experimental data for individual amyloid oligomeric states and conformations during the onset of fibril formation for NFGAIL oligomers.
Figure: (Left) Pathway of amyloid formation (nucleation-dependent fibril formation). Within this pathway, an increase in the mass of amyloid fibrils is observed during fibrillation process, producing a sigmoid kinetic curve which comprises nucleation (lag phase) and elongation (growth phase). (Right) Negative staining transmission electron microscopy (TEM) images of an NFGAIL solution (4 mM) in ammonium acetate showing the morphology of the resulting amyloid fibrils.
In further work we aim to incorporate halogenated Phe residues into NFGAIL via solid phase peptide synthesis. We will use thioflavin T-(ThT) fluorescence staining, transmission electron microscopy (TEM) and solid-state 19F-NMR spectroscopy to study the impact of subtle changes in electron density on the amyloid folding kinetics. Our collaborators include Harmut Oschkinat (FMP), Kevin Pagel (FU Berlin), Christoph Schütte (FU Berlin), Ralf Kornhuber (FU Berlin), and Andreas Thünemann (BAM).
 W. Hoffmann, K. Folmert, J. Moschner, X. Huang, H. von Berlepsch, B. Koksch, M. T. Bowers, G. von Helden, K. Pagel, Journal of the American Chemical Society 2018, 140, 244-249. DOI: 10.1021/jacs.7b09510