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Publications

An up to date list of the groups publications can be found here or here

 “*” correspondence, “#” shared first authorship, bold = members of lab

  1. Rudolf O Schlechter, Evan J Kear, Michał Bernach, Daniela M Remus, Mitja NP Remus-Emsermann (2023) Metabolic resource overlap impacts competition among phyllosphere bacteria. The ISME Journal 

    DOI: https://doi.org/10.1038/s41396-023-01459-0 

  2. M Miebach, L Faivre, D Schubert, P Jameson, M Remus-Emsermann (2023) Non-pathogenic leaf-colonising bacteria elicit pathogen-like responses in a colonisation density-dependent manner. bioRxiv DOI: https://doi.org/10.1101/2023.05.04.539505 
  3. J Schott, J Rakei, MNP Remus-Emsermann, PR Johnston, S Mbedi, S Sparmann, M Hilker, LR Paniagua Voirol (2023) Microbial Associates of the Elm Leaf Beetle: Uncovering the Absence of Resident Bacteria and the Influence of Fungi on Insect Performance. bioRxiv DOI: https://doi.org/10.1101/2023.06.23.546294 
  4. Laurin Müller, Denise C Müller, Sandrine Kammerecker, Marco Fluri, Lukas Neutsch, M Remus Emsermann, Cosima Pelludat (2022) Priority effects in the apple flower determine if the siderophore desferrioxamine is a virulence factor for Erwinia amylovora CFBP1430. Applied and Environmental Microbiology DOI: https://doi.org/10.1128/aem.02433-21
  5. C Stocks, RO Schlechter, MNP Remus-Emsermann (2022) Chromatic bacteria v. 2-A Himar1 transposon-based delivery vector to extend the host range of a toolbox to fluorescently tag bacteria. Bacteria DOI: https://doi.org/10.3390/bacteria1010006
  6. M Miebach, R Jiang, Paula Elizabeth Jameson, MNP Remus-Emsermann (2022) Plant protoplast-based assay to screen for salicylic acid response-modulating bacteria. bioRxiv DOI: https://doi.org/10.1101/2022.11.02.514867 
  7. Rudolf O Schlechter, Evan J Kear, Daniela M Remus, Mitja NP Remus-Emsermann (2021) Fluorescent Protein Expression as a Proxy for Bacterial Fitness in a High-Throughput Assay. Applied and Environmental Microbiology DOI: https://doi.org/10.1128/AEM.00982-21
  8. MNP Remus-Emsermann, D Aicher, C Pelludat, P Gisler, D Drissner (2021) Conjugation Dynamics of Self-Transmissible and Mobilisable Plasmids into E. coli O157:H7 on Arabidopsis thaliana Rosettes. Antibiotics https://doi.org/10.3390/antibiotics10080928
  9. S Oso, F Fuchs, C Übermuth, L Zander, S Daunaraviciute, DM Remus, I Stötzel, M Wüst, L Schreiber, MNP Remus-Emsermann (2021) Biosurfactants produced by phyllosphere-colonizing pseudomonads impact diesel degradation but not colonization of leaves of gnotobiotic Arabidopsis thaliana. Applied and Environmental Microbiology DOI: https://doi.org/10.1128/AEM.00091-21
  10. Miebach M, Schlechter RO, Clemens J, Jameson PE, Remus-Emsermann MNP (2020) Litterbox-A gnotobiotic zeolite-clay system to investigate Arabidopsis-microbe interactions. Microorganisms  DOI: 10.3390/microorganisms8040464 
  11. Kron AS, Zengerer V, Bieri M, Dreyfuss V, Sostizzo T, Schmid M, Lutz M, Remus-Emsermann MNP, Pelludat C (2020) Pseudomonas orientalis F9 pyoverdine, safracin, and phenazine mutants remain effective antagonists against Erwinia amylovora in apple flowers. Applied and Environmental Microbiology DOI: 10.1128/AEM.02620-19
  12. van Stan JT, Morris CE, Aung K, Kuzyakov Y, Magyar D, Rebollar EA, Remus-Emsermann MNP, Uroz S, Vandenkoornhuyse (2020) Precipitation Partitioning—Hydrologic Highways Between Microbial Communities of the Plant Microbiome? In “Precipitation Partitioning by Vegetation” Editors van Stan JT, Gutmann E, Friesen J. Springer Nature  DOI: 10.1007/978-3-030-29702-2_14
  13. Soffe R, Bernach M, Remus-Emsermann MNP, Nock V (2019) Replicating Arabidopsis Model Leaf Surfaces for Phyllosphere Microbiology. Scientific Reports 9, 14420
  14. Kremer K, van Teeseling M, Schada von Borzyskowski L, Bernhardsgrütter I, van Spanning RJM, Gates A, Remus-Emsermann M, Thanbichler M, and Erb TJ (2019) Dynamic metabolic rewiring enables efficient acetyl-CoA assimilation in Paracoccus denitrificans. mBio DOI: 10.1128/mBio.00805-19
  15. Soffe R, Altenhuber N, Bernach M, Remus-Emsermann MNP, Nock V (2019) Comparison of Replica Leaf Surface Materials for Phyllosphere Microbiology. Plos One DOI: 10.1371/journal.pone.0218102
  16. Jameson PE, Dhandapani P, Song J, Zatloukal M, Strnad M, Remus-Emsermann MNP, Schlechter RO, Novak O (2019) The cytokinin complex associated with Rhodococcus fascians: which compounds are critical for virulence? Frontiers in Plant Science DOI: 10.3389/fpls.2019.00674
  17. van Hamelsveld S, Adewale M, Kurenbach B, Godsoe W, Harding J, Remus-Emsermann M, Heinemann J (2019)
    Prevalence of antibiotic resistant Escherichia coli isolated from urban and agricultural streams in Canterbury, New Zealand. FEMS Microbiology Letters, fnz104, DOI:10.1093/femsle/fnz104
  18. Schlechter RO, Miebach M, Remus-Emsermann MNP* (2019) Driving Factors Of Epiphytic Bacterial Communities: A Review. Journal of Advanced Research DOI: 10.1016/j.jare.2019.03.003
  19. Oso S, Walters M, Schlechter RO, Remus-Emsermann MNP* (2019) Utilisation of hydrocarbons and production of surfactants by bacteria isolated from plant leaf surfaces. FEMS microbiology letters DOI: 10.1093/femsle/fnz061
  20. Schlechter RO* and Remus-Emsermann MNP* (2019) Delivering "Chromatic Bacteria" Fluorescent Protein Tags to Proteobacteria Using Conjugation. Bio-protocols DOI: 10.21769/BioProtoc.3199
  21. Bernach M, Soffe R, Remus-Emsermann MNP, Nock V (2019) Hybrid PDMS Patterning for Phyllosphere Microbiology. Japanese Journal of Applied Physics DOI: 10.7567/1347-4065/ab0498 
  22. Jun H, Kurenbach B, Aitken J, Wasa A, Remus-Emsermann MNP, Godsoe W, Heinemann JA (2019) Effects of sub-lethal concentrations of copper ammonium acetate, pyrethrins and atrazine on the response of Escherichia coli to antibiotics. F1000 research DOI: 10.12688/f1000research.17652.1
  23. Schlechter RO, Jun H#, Bernach M#, Oso S, Boyd E, Munoz-Lintz DA, Dobson RCJ,  Remus DM and Remus-Emsermann MNP* (2018) Chromatic bacteria – A broad host-range plasmid and chromosomal insertion toolbox for fluorescent protein expression in bacteria. Frontiers in Microbiology  DOI: 10.3389/fmicb.2018.03052
  24. Remus-Emsermann MNP*, Pelludat C, Gisler P, Drissner D (Preprint) Conjugation dynamics of self-transmissible and mobilisable plasmids into E. coli O157:H7 on Arabidopsis thaliana rosettes. BioRxiv DOI: 10.1101/375402
  25. Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH (2018) Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats. Nucleic acid research DOI: 10.1093/nar/gky726       Endorsed at F1000prime
  26. Remus-Emsermann MNP* and Schlechter RO (2018) Phyllosphere microbiology: at the interface between microbial individuals and the plant host. New Phytologist DOI: 10.1111/nph.15054      Invited Tansley insight review
  27. Zengerer V, Schmid M, Marco B, Muller DC, Remus-Emsermann MNP, Ahrens CH and Pelludat C (2018) Pseudomonas orientalis F9: A Potent Antagonist against Phytopathogens and Phytotoxic Effect in the Apple Flower. Frontiers in Microbiology DOI: 10.3389/fmicb.2018.00145
  28. Gekenidis, MT, Gossin, D, Schmelcher, M, Schöner, U, Remus-Emsermann, M*, Drissner, D*. (2017) Dynamics of culturable mesophilic bacterial communities of three fresh herbs and their production environment. Journal of Applied Microbiology DOI: 10.1111/jam.13532          Editors choice
  29. Remus-Emsermann MRE#, Schmid M#, Gekenidis MT, Pelludat C, Frey J, Ahrens CH, Drissner D. (2016) Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites. Standards in Genomic Sciences DOI: 10.1186/s40793-016-0190-6
  30. Remus-Emsermann MRE*, Gisler P and Drissner D. A set of miniTn7-transposon delivery vectors for inducible and constitutive fluorescent tagging of Escherichia coli and other Enterobacteriaceae. FEMS microbiology reports DOI: 10.1093/femsle/fnw178
  31. Born Y#, Remus-Emsermann MNP#, Kamber T, Pelludat C. (2016) The Fe2+ chelator Proferrorosamine A: a gene cluster of Erwinia rhapontici P45 involved in its synthesis and its impact on growth of Erwinia amylovora CFBP1430. Microbiology DOI: 10.1099/mic.0.000231
  32. Bai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch P, Spaepen S, Remus-Emsermann MNP, Huettel B, McHardy A, Vorholt J, Schulze-Lefert P (2015) Functional overlap and specialization of the Arabidopsis leaf and root microbiotas. Nature 528:364-369
  33. Ledermann R, Bartsch I, Remus-Emsermann MNP, Vorholt JA, Fischer HM (2015) Stable fluorescent and enzymatic tagging of Bradyrhizobium diazoefficiens to analyse host-plant infection and colonization. Molecular Plant Microbe Interactions DOI: 10.1094/MPMI-03-15-0054-TA 
  34. Freimoser FM, Pelludat C, Remus-Emsermann MNP* (2015) Tritagonists: A novel framework for the study of microbial interactions. The ISME Journal DOI: 10.1038/ismej.2015.92          highlighted on microbe.net
  35. Schada von Borzyskowski L#, Remus-Emsermann MNP#, Weishaupt R, Vorholt JA, Erb TJ. A set of versatile brick-vectors and promoters for the assembly, expression and integration of synthetic operons in Methylobacterium extorquens AM1 and other Alphaproteobacteria. ACS Synthetic Biology DOI: 10.1021/sb500221v 
  36. Remus-Emsermann MNP*, Lücker S, Müller DB, Potthoff E, Daims H, Vorholt JA (2014) Spatial distribution analyses of natural phyllosphere- colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization. Environmental Microbiology 16(7): 2329-2340 
  37. Remus-Emsermann MNP*, Kowalchuk GA, Leveau JHJ (2013). Single‐cell versus population‐level reproductive success of bacterial immigrants to pre‐colonized leaf surfaces. Environmental Microbiology Reports 5(3): 387-392 
  38. Diard M, Garcia V, Maier L, Remus-Emsermann MNP, Regoes RR, Ackermann M, Hardt WD (2013). Stabilization of cooperative virulence by the expression of an avirulent phenotype. Nature 494(7437): 353-356       Endorsed at F1000prime
  39. Remus-Emsermann MNP, Kim EB, Marco ML, Tecon R, Leveau JHJ (2013). Draft genome sequence of the phyllosphere model bacterium Pantoea agglomerans 299R. Genome Announcements doi: 10.1128/genomeA.00036-13
  40. Garbeva P, Tyc O, Remus-Emsermann M, van der Wal A, Vos M, Silby M and de Boer W (2012) No apparent costs for facultative antibiotic production by the soil bacterium Pseudomonas fluorescens Pf0-1. PLoS One (11): e27266. doi:10.1371/journal.pone.0027266
  41. Remus-Emsermann MNP, Tecon R, Kowalchuk GA and Leveau JHJ (2012) Variation in local carrying capacity and the individual fate of bacterial colonizers in the phyllosphere. The ISME Journal 6: 756-765
  42. Remus-Emsermann MNP, Oliveira S, Schreiber L and Leveau JHJ (2011) Quantification of lateral heterogeneity in carbohydrate permeability of isolated plant leaf cuticles measured by gas chromatography and single cell bioreporters. Frontiers in Microbiology 2: 197
  43. Remus-Emsermann MNP and Leveau JHJ (2010) Linking environmental heterogeneity and reproductive success at single-cell resolution. The ISME Journal 4: 215–222
  44. Franke R, Höfer R, Briesen I, Emsermann M, Efremova N, Yephremov A and Schreiber L (2009) The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza micropyle region of seeds. The Plant Journal 57: 80-95
  45. Remus-Emsermann MNP and Vorholt JA. Complexities of Microbial Life on Leaf Surfaces. Microbe 9 (11), 448-452