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Polyfluoroalkyl-Tagged Cell-Penetrating Peptide Additives Enhance Intracellular Protein Delivery via Sustained Monomeric Lipid Interaction

S. Hansen, H. Zupan, F. Mutlu, M. Lehmann, B. Keller, J. Heberle, C. Hackenberger – 2025

Recent advances in cell-penetrating-peptide (CPP)-mediated intracellular protein delivery strategies have highlighted the importance of sustained membrane association to improve delivery efficiency. In this study, we report cell-surface-reactive, polyfluoroalkyl-tagged polyarginine peptides as CPP-additives with varying fluorine content, which enhances cytosolic protein delivery in living cells. We observed that CPP-additives containing 11 13 fluorine atoms significantly enhance intracellular protein delivery relative to a tagless control (> 2-fold) at low micromolar concentrations (2.5 µM) without observable cytotoxicity. Live-cell time-lapse fluorescence imaging revealed that a CPP-additive with 13 fluorine atoms exhibited prolonged membrane association relative to a tagless control (> 5 minutes) and facilitated rapid protein internalization within 10 minutes. Surface-enhanced infrared absorption spectroscopy (SEIRAS) measurements with POPC model membranes indicated that polyfluoroalkylation overall strengthens CPP-additive lipid bilayer interactions. Notably, we found that while fluorous CPP-additives initially interacted with the lipid bilayer predominantly as aggregates, they subsequently inserted into the membrane interior as individual molecules without fluorous tag-tag association. Complementary molecular dynamics simulations of the initial membrane association step provided atomistic insights into these monomeric fluoroalkyl-mediated lipid interactions, revealing partial lipid insertion of an arginine-containing CPP-additive with 13 fluorine atoms while no insertion was observed for a non-fluorinated control at the same time scale. Collectively, our findings introduce polyfluoroalkyl-tagged CPP-additives as potent, non-cytotoxic vectors for intracellular protein delivery and provide mechanistic insights into their monomeric CPP-additive-lipid bilayer interactions.

Title
Polyfluoroalkyl-Tagged Cell-Penetrating Peptide Additives Enhance Intracellular Protein Delivery via Sustained Monomeric Lipid Interaction
Author
S. Hansen, H. Zupan, F. Mutlu, M. Lehmann, B. Keller, J. Heberle, C. Hackenberger
Date
2025
Source(s)
Citation
ChemRxiv preprint
Type
Text